matlab-based analytical results Search Results


matlab-based fast fourier transform (fft) analysis  (MathWorks Inc)
90
MathWorks Inc matlab-based fast fourier transform (fft) analysis
Matlab Based Fast Fourier Transform (Fft) Analysis, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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t_tide matlab subroutines  (MathWorks Inc)
90
MathWorks Inc t_tide matlab subroutines
T Tide Matlab Subroutines, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab-based data analysis framework  (MathWorks Inc)
90
MathWorks Inc matlab-based data analysis framework
Matlab Based Data Analysis Framework, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1d clustering (by matlab k-means analysis based on the square of the euclidian distance)  (MathWorks Inc)
90
MathWorks Inc 1d clustering (by matlab k-means analysis based on the square of the euclidian distance)
1d Clustering (By Matlab K Means Analysis Based On The Square Of The Euclidian Distance), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
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nifti toolbox  (MathWorks Inc)
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MathWorks Inc nifti toolbox
Nifti Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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program matlab 7.4  (MathWorks Inc)
90
MathWorks Inc program matlab 7.4
Program Matlab 7.4, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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density-based clustering (dbscan)  (MathWorks Inc)
90
MathWorks Inc density-based clustering (dbscan)
a, t-SNE 2D projection of the RNA expression data, clustered with <t>DBSCAN</t> (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.
Density Based Clustering (Dbscan), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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density-based clustering (dbscan) - by Bioz Stars, 2026-03
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event-driven simulations matlab r2018b  (MathWorks Inc)
90
MathWorks Inc event-driven simulations matlab r2018b
a, t-SNE 2D projection of the RNA expression data, clustered with <t>DBSCAN</t> (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.
Event Driven Simulations Matlab R2018b, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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illumina dna sequencing results  (Illumina Inc)
99
Illumina Inc illumina dna sequencing results
a, t-SNE 2D projection of the RNA expression data, clustered with <t>DBSCAN</t> (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.
Illumina Dna Sequencing Results, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab-based cosmos analysis software  (MathWorks Inc)
90
MathWorks Inc matlab-based cosmos analysis software
a, t-SNE 2D projection of the RNA expression data, clustered with <t>DBSCAN</t> (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.
Matlab Based Cosmos Analysis Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab/simulink model  (MathWorks Inc)
90
MathWorks Inc matlab/simulink model
a, t-SNE 2D projection of the RNA expression data, clustered with <t>DBSCAN</t> (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.
Matlab/Simulink Model, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab r2014a  (MathWorks Inc)
90
MathWorks Inc matlab r2014a
a, t-SNE 2D projection of the RNA expression data, clustered with <t>DBSCAN</t> (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.
Matlab R2014a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


a, t-SNE 2D projection of the RNA expression data, clustered with DBSCAN (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.

Journal: Nature

Article Title: Visualizing DNA folding and RNA in embryos at single-cell resolution

doi: 10.1038/s41586-019-1035-4

Figure Lengend Snippet: a, t-SNE 2D projection of the RNA expression data, clustered with DBSCAN (see ). Annotations identified by manual inspection are indicated by matching colours and numbers (labelled on the right). This number/colour legend is used for all panels. b, The relative embryonic spatial positions of cells in each group shown for three embryos. c, Distance maps from ORCA for each assigned group. d, Normalized distance maps (observed minus expected distance) for each group. The expected distance accounts for the polymer nature of DNA, whereby sequences closer in linear position along the genome are expected to be closer together in 3D space. The expected distance was calculated by fitting a power law to the distribution of 3D separation distances between barcodes as a function of their linear separation for all data in all cells.

Article Snippet: The resulting clusters were separated using density-based clustering (DBSCAN) (Matlab implementation, Yarpiz 2015).

Techniques: RNA Expression, Polymer